bnpsd
Simulate Genotypes from the BN-PSD Admixture Model
The Pritchard-Stephens-Donnelly (PSD) admixture model has k intermediate subpopulations from which n individuals draw their alleles dictated by their individual-specific admixture proportions. The BN-PSD model additionally imposes the Balding-Nichols (BN) allele frequency model to the intermediate populations, which therefore evolved independently from a common ancestral population T with subpopulation-specific FST (Wright's fixation index) parameters. The BN-PSD model can be used to yield complex population structures. This simulation approach is now extended to subpopulations related by a tree. Method described in Ochoa and Storey (2021) doi:10.1371/journal.pgen.1009241.
- Version1.3.13
- R versionunknown
- LicenseGPL (≥ 3)
- Needs compilation?No
- bnpsd citation info
- Last release08/25/2021
Documentation
Team
Alejandro Ochoa
John D. Storey
Insights
Last 30 days
This package has been downloaded 293 times in the last 30 days. Now we're getting somewhere! Enough downloads to populate a lively group chat. The following heatmap shows the distribution of downloads per day. Yesterday, it was downloaded 3 times.
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Last 365 days
This package has been downloaded 3,904 times in the last 365 days. Consider this 'mid-tier influencer' status—if it were a TikTok, it would get a nod from nieces and nephews. The day with the most downloads was Aug 22, 2024 with 40 downloads.
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Dependencies
- Imports2 packages
- Suggests5 packages
- Reverse Suggests4 packages