breakaway
Species Richness Estimation and Modeling
Understanding the drivers of microbial diversity is an important frontier of microbial ecology, and investigating the diversity of samples from microbial ecosystems is a common step in any microbiome analysis. 'breakaway' is the premier package for statistical analysis of microbial diversity. 'breakaway' implements the latest and greatest estimates of species richness, described in Willis and Bunge (2015) doi:10.1111/biom.12332, Willis et al. (2017) doi:10.1111/rssc.12206, and Willis (2016) doi:10.48550/arXiv.1604.02598, as well as the most commonly used estimates, including the objective Bayes approach described in Barger and Bunge (2010) doi:10.1214/10-BA527.
- Version4.8.4
- R version≥ 3.5.0
- LicenseGPL-2
- Needs compilation?No
- Willis and Bunge (2015)
- Willis et al. (2017)
- Willis (2016)
- Barger and Bunge (2010)
- Last release11/22/2022
Documentation
Team
Amy D Willis
Bryan D Martin
Show author detailsRolesAuthorPauline Trinh
Show author detailsRolesAuthorSarah Teichman
Show author detailsRolesAuthorDavid Clausen
Show author detailsRolesAuthorKathryn Barger
Show author detailsRolesAuthorJohn Bunge
Show author detailsRolesAuthor
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Dependencies
- Imports5 packages
- Suggests7 packages