ccRemover

Removes the Cell-Cycle Effect from Single-Cell RNA-Sequencing Data

CRAN Package

Implements a method for identifying and removing the cell-cycle effect from scRNA-Seq data. The description of the method is in Barron M. and Li J. (2016) . Identifying and removing the cell-cycle effect from single-cell RNA-Sequencing data. Submitted. Different from previous methods, ccRemover implements a mechanism that formally tests whether a component is cell-cycle related or not, and thus while it often thoroughly removes the cell-cycle effect, it preserves other features/signals of interest in the data.

  • Version1.0.4
  • R version≥ 2.10.0
  • LicenseGPL-3
  • Needs compilation?No
  • Last release08/19/2017

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  • Depends1 package
  • Imports1 package
  • Suggests2 packages