coalescentMCMC

Flexible framework for coalescent analyses in R. It includes a main function running the MCMC algorithm, auxiliary functions for tree rearrangement, and some functions to compute population genetic parameters. Extended description can be found in Paradis (2020) doi:10.1201/9780429466700. For details on the MCMC algorithm, see Kuhner et al. (1995) doi:10.1093/genetics/140.4.1421 and Drummond et al. (2002) doi:10.1093/genetics/161.3.1307.

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