conos
Clustering on Network of Samples
Wires together large collections of single-cell RNA-seq datasets, which allows for both the identification of recurrent cell clusters and the propagation of information between datasets in multi-sample or atlas-scale collections. 'Conos' focuses on the uniform mapping of homologous cell types across heterogeneous sample collections. For instance, users could investigate a collection of dozens of peripheral blood samples from cancer patients combined with dozens of controls, which perhaps includes samples of a related tissue such as lymph nodes. This package interacts with data available through the 'conosPanel' package, which is available in a 'drat' repository. To access this data package, see the instructions at
- Version1.5.2
- R version≥ 3.5.0
- LicenseGPL-3
- Needs compilation?Yes
- Last release02/26/2024
Documentation
Team
Evan Biederstedt
Viktor Petukhov
Show author detailsRolesAuthorNikolas Barkas
Show author detailsRolesAuthorPeter Kharchenko
Show author detailsRolesAuthorWeiliang Qiu
Show author detailsRolesContributor
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- Depends3 packages
- Imports21 packages
- Suggests26 packages
- Linking To4 packages
- Reverse Suggests2 packages