conos

Clustering on Network of Samples

CRAN Package

Wires together large collections of single-cell RNA-seq datasets, which allows for both the identification of recurrent cell clusters and the propagation of information between datasets in multi-sample or atlas-scale collections. 'Conos' focuses on the uniform mapping of homologous cell types across heterogeneous sample collections. For instance, users could investigate a collection of dozens of peripheral blood samples from cancer patients combined with dozens of controls, which perhaps includes samples of a related tissue such as lymph nodes. This package interacts with data available through the 'conosPanel' package, which is available in a 'drat' repository. To access this data package, see the instructions at . The size of the 'conosPanel' package is approximately 12 MB.

  • Version1.5.2
  • R version≥ 3.5.0
  • LicenseGPL-3
  • Needs compilation?Yes
  • Last release02/26/2024

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  • Depends3 packages
  • Imports21 packages
  • Suggests26 packages
  • Linking To4 packages
  • Reverse Suggests2 packages