cytometree

Automated Cytometry Gating and Annotation

CRAN Package

Given the hypothesis of a bi-modal distribution of cells for each marker, the algorithm constructs a binary tree, the nodes of which are subpopulations of cells. At each node, observed cells and markers are modeled by both a family of normal distributions and a family of bi-modal normal mixture distributions. Splitting is done according to a normalized difference of AIC between the two families. Method is detailed in: Commenges, Alkhassim, Gottardo, Hejblum & Thiebaut (2018) doi:10.1002/cyto.a.23601.


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Insights

Last 30 days

This package has been downloaded 276 times in the last 30 days. More than a random curiosity, but not quite a blockbuster. Still, it's gaining traction! The following heatmap shows the distribution of downloads per day. Yesterday, it was downloaded 4 times.

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Fri
Sat
0 downloadsFeb 9, 2025
0 downloadsFeb 10, 2025
0 downloadsFeb 11, 2025
0 downloadsFeb 12, 2025
0 downloadsFeb 13, 2025
0 downloadsFeb 14, 2025
7 downloadsFeb 15, 2025
10 downloadsFeb 16, 2025
11 downloadsFeb 17, 2025
7 downloadsFeb 18, 2025
18 downloadsFeb 19, 2025
20 downloadsFeb 20, 2025
14 downloadsFeb 21, 2025
7 downloadsFeb 22, 2025
5 downloadsFeb 23, 2025
6 downloadsFeb 24, 2025
5 downloadsFeb 25, 2025
4 downloadsFeb 26, 2025
22 downloadsFeb 27, 2025
3 downloadsFeb 28, 2025
4 downloadsMar 1, 2025
2 downloadsMar 2, 2025
11 downloadsMar 3, 2025
14 downloadsMar 4, 2025
23 downloadsMar 5, 2025
11 downloadsMar 6, 2025
5 downloadsMar 7, 2025
3 downloadsMar 8, 2025
2 downloadsMar 9, 2025
6 downloadsMar 10, 2025
15 downloadsMar 11, 2025
7 downloadsMar 12, 2025
9 downloadsMar 13, 2025
3 downloadsMar 14, 2025
18 downloadsMar 15, 2025
4 downloadsMar 16, 2025
0 downloadsMar 17, 2025
0 downloadsMar 18, 2025
0 downloadsMar 19, 2025
0 downloadsMar 20, 2025
0 downloadsMar 21, 2025
0 downloadsMar 22, 2025
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The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.

Last 365 days

This package has been downloaded 3,079 times in the last 365 days. Now we’re talking! This work is officially 'heard of in academic circles', just like those wild research papers on synthetic bananas. The day with the most downloads was Sep 11, 2024 with 36 downloads.

The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.

Data provided by CRAN


Binaries


Dependencies

  • Depends1 package
  • Imports5 packages
  • Suggests4 packages
  • Linking To2 packages