cytometree
Automated Cytometry Gating and Annotation
Given the hypothesis of a bi-modal distribution of cells for each marker, the algorithm constructs a binary tree, the nodes of which are subpopulations of cells. At each node, observed cells and markers are modeled by both a family of normal distributions and a family of bi-modal normal mixture distributions. Splitting is done according to a normalized difference of AIC between the two families. Method is detailed in: Commenges, Alkhassim, Gottardo, Hejblum & Thiebaut (2018)
- Version2.0.2
- R version≥ 3.1.0
- LicenseLGPL-3
- Licensefile LICENSE
- Needs compilation?Yes
- cytometree citation info
- Last release12/04/2019
Documentation
Team
Boris P Hejblum
Chariff Alkhassim, Boris P Hejblum, Anthony Devaux, Van Hung Huynh Tran
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- Depends2 packages
- Imports8 packages
- Suggests4 packages
- Linking To2 packages
- Reverse Imports1 package