cytometree

Automated Cytometry Gating and Annotation

CRAN Package

Given the hypothesis of a bi-modal distribution of cells for each marker, the algorithm constructs a binary tree, the nodes of which are subpopulations of cells. At each node, observed cells and markers are modeled by both a family of normal distributions and a family of bi-modal normal mixture distributions. Splitting is done according to a normalized difference of AIC between the two families. Method is detailed in: Commenges, Alkhassim, Gottardo, Hejblum & Thiebaut (2018) doi:10.1002/cyto.a.23601.


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Insights

Last 30 days

This package has been downloaded 261 times in the last 30 days. More than a random curiosity, but not quite a blockbuster. Still, it's gaining traction! The following heatmap shows the distribution of downloads per day. Yesterday, it was downloaded 14 times.

Sun
Mon
Tue
Wed
Thu
Fri
Sat
0 downloadsMar 2, 2025
0 downloadsMar 3, 2025
14 downloadsMar 4, 2025
23 downloadsMar 5, 2025
11 downloadsMar 6, 2025
5 downloadsMar 7, 2025
3 downloadsMar 8, 2025
2 downloadsMar 9, 2025
6 downloadsMar 10, 2025
15 downloadsMar 11, 2025
7 downloadsMar 12, 2025
9 downloadsMar 13, 2025
3 downloadsMar 14, 2025
18 downloadsMar 15, 2025
4 downloadsMar 16, 2025
12 downloadsMar 17, 2025
10 downloadsMar 18, 2025
2 downloadsMar 19, 2025
12 downloadsMar 20, 2025
6 downloadsMar 21, 2025
5 downloadsMar 22, 2025
7 downloadsMar 23, 2025
12 downloadsMar 24, 2025
3 downloadsMar 25, 2025
3 downloadsMar 26, 2025
4 downloadsMar 27, 2025
19 downloadsMar 28, 2025
9 downloadsMar 29, 2025
12 downloadsMar 30, 2025
8 downloadsMar 31, 2025
3 downloadsApr 1, 2025
14 downloadsApr 2, 2025
0 downloadsApr 3, 2025
0 downloadsApr 4, 2025
0 downloadsApr 5, 2025
2
23

The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.

Last 365 days

This package has been downloaded 3,069 times in the last 365 days. That's enough downloads to impress a room full of undergrads. A commendable achievement indeed. The day with the most downloads was Sep 11, 2024 with 36 downloads.

The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.

Data provided by CRAN


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Dependencies

  • Depends1 package
  • Imports5 packages
  • Suggests4 packages
  • Linking To2 packages