dowser

B Cell Receptor Phylogenetics Toolkit

CRAN Package

Provides a set of functions for inferring, visualizing, and analyzing B cell phylogenetic trees. Provides methods to 1) reconstruct unmutated ancestral sequences, 2) build B cell phylogenetic trees using multiple methods, 3) visualize trees with metadata at the tips, 4) reconstruct intermediate sequences, 5) detect biased ancestor-descendant relationships among metadata types Workflow examples available at documentation site (see URL). Citations: Hoehn et al (2022) , Hoehn et al (2021) .


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  • Depends2 packages
  • Imports19 packages
  • Suggests4 packages