dowser
B Cell Receptor Phylogenetics Toolkit
Provides a set of functions for inferring, visualizing, and analyzing B cell phylogenetic trees. Provides methods to 1) reconstruct unmutated ancestral sequences, 2) build B cell phylogenetic trees using multiple methods, 3) visualize trees with metadata at the tips, 4) reconstruct intermediate sequences, 5) detect biased ancestor-descendant relationships among metadata types Workflow examples available at documentation site (see URL). Citations: Hoehn et al (2022) doi:10.1371/journal.pcbi.1009885, Hoehn et al (2021) doi:10.1101/2021.01.06.425648.
- Version2.3
- R versionunknown
- LicenseAGPL-3
- Needs compilation?No
- dowser citation info
- Last release10/22/2024
Documentation
Team
Kenneth Hoehn
Jason Vander Heiden
Show author detailsRolesContributorSusanna Marquez
Show author detailsRolesContributorCole Jensen
Show author detailsRolesContributorSteven Kleinstein
Show author detailsRolesAuthor, Copyright holder
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- Depends1 package
- Imports14 packages
- Suggests3 packages