dowser
B Cell Receptor Phylogenetics Toolkit
Provides a set of functions for inferring, visualizing, and analyzing B cell phylogenetic trees. Provides methods to 1) reconstruct unmutated ancestral sequences, 2) build B cell phylogenetic trees using multiple methods, 3) visualize trees with metadata at the tips, 4) reconstruct intermediate sequences, 5) detect biased ancestor-descendant relationships among metadata types Workflow examples available at documentation site (see URL). Citations: Hoehn et al (2022)
- Version2.3
- R version≥ 4.0
- LicenseAGPL-3
- Needs compilation?No
- dowser citation info
- Last release10/22/2024
Documentation
- VignetteBuild Lineage Trees
- Vignettesource
- VignetteR code
- VignetteDiscrete Trait Analysis
- Vignettesource
- VignetteR code
- VignetteReconstruct Clonal Germlines
- Vignettesource
- VignetteR code
- VignetteMeasurable evolution
- Vignettesource
- VignetteR code
- VignettePlotting Lineage Trees
- Vignettesource
- VignetteR code
- VignetteQuickstart
- Vignettesource
- VignetteR code
- VignetteBuilding trees with paired heavy and light chain data
- Vignettesource
- VignetteR code
- VignetteReconstruct Intermediate Sequences
- Vignettesource
- VignetteR code
- MaterialREADME
- MaterialNEWS
Team
Kenneth Hoehn
Cole Jensen
Show author detailsRolesContributorSusanna Marquez
Show author detailsRolesContributorJason Vander Heiden
Show author detailsRolesContributorSteven Kleinstein
Show author detailsRolesAuthor, Copyright holder
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- Depends2 packages
- Imports19 packages
- Suggests4 packages