ez.combat
Easy ComBat Harmonization
A dataframe-friendly implementation of ComBat Harmonization which uses an empirical Bayesian framework to remove batch effects. Johnson WE & Li C (2007) doi:10.1093/biostatistics/kxj037 "Adjusting batch effects in microarray expression data using empirical Bayes methods." Fortin J-P, Cullen N, Sheline YI, Taylor WD, Aselcioglu I, Cook PA, Adams P, Cooper C, Fava M, McGrath PJ, McInnes M, Phillips ML, Trivedi MH, Weissman MM, & Shinohara RT (2017) doi:10.1016/j.neuroimage.2017.11.024 "Harmonization of cortical thickness measurements across scanners and sites." Fortin J-P, Parker D, Tuné B, Watanabe T, Elliott MA, Ruparel K, Roalf DR, Satterthwaite TD, Gur RC, Gur RE, Schultz RT, Verma R, & Shinohara RT (2017) doi:10.1016/j.neuroimage.2017.08.047 "Harmonization of multi-site diffusion tensor imaging data."
- Version1.0.0
- R versionunknown
- LicenseArtistic-2.0
- Needs compilation?No
- Johnson WE & Li C (2007) "Adjusting batch effects in microarray expression data using empirical Bayes methods."
- Fortin J-P, Cullen N, Sheline YI, Taylor WD, Aselcioglu I, Cook PA, Adams P, Cooper C, Fava M, McGrath PJ, McInnes M, Phillips ML, Trivedi MH, Weissman MM, & Shinohara RT (2017) "Harmonization of cortical thickness measurements across scanners and sites."
- Fortin J-P, Parker D, Tuné B, Watanabe T, Elliott MA, Ruparel K, Roalf DR, Satterthwaite TD, Gur RC, Gur RE, Schultz RT, Verma R, & Shinohara RT (2017) "Harmonization of multi-site diffusion tensor imaging data."
- Last release06/07/2021
Documentation
Team
Timothy R. Koscik
Show author detailsRolesAuthor, Maintainer, Copyright holder
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