CRAN/E | fastglmpca

fastglmpca

Fast Algorithms for Generalized Principal Component Analysis

Installation

About

Implements fast, scalable optimization algorithms for fitting generalized principal components analysis (GLM-PCA) models, as described in "A Generalization of Principal Components Analysis to the Exponential Family" Collins M, Dasgupta S, Schapire RE (2002, ISBN:9780262271738), and subsequently "Feature Selection and Dimension Reduction for Single-Cell RNA-Seq Based on a Multinomial Model" Townes FW, Hicks SC, Aryee MJ, Irizarry RA (2019) doi:10.1186/s13059-019-1861-6.

github.com/stephenslab/fastglmpca
System requirements GNU make
Bug report File report

Key Metrics

Version 0.1-103
R ≥ 3.6
Published 2024-01-31 227 days ago
Needs compilation? yes
License GPL-2
License GPL-3
CRAN checks fastglmpca results

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Maintainer

Maintainer

Eric Weine

Authors

Eric Weine

aut / cre

Peter Carbonetto

aut

Matthew Stephens

aut

Material

NEWS
Reference manual
Package source

Vignettes

Analysis of single-cell RNA-seq data using fastglmpca

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-develnot available

x86_64

r-releasenot available

x86_64

r-oldrelnot available

x86_64

Depends

R ≥ 3.6

Imports

utils
Matrix
MatrixExtra
stats
distr
daarem
Rcpp ≥1.0.8
RcppParallel ≥ 5.1.5

Suggests

testthat
knitr
rmarkdown
ggplot2
cowplot

LinkingTo

Rcpp
RcppArmadillo
RcppParallel