fastqcr

Quality Control of Sequencing Data

CRAN Package

'FASTQC' is the most widely used tool for evaluating the quality of high throughput sequencing data. It produces, for each sample, an html report and a compressed file containing the raw data. If you have hundreds of samples, you are not going to open up each 'HTML' page. You need some way of looking at these data in aggregate. 'fastqcr' Provides helper functions to easily parse, aggregate and analyze 'FastQC' reports for large numbers of samples. It provides a convenient solution for building a 'Multi-QC' report, as well as, a 'one-sample' report with result interpretations.

  • Version0.1.3
  • R version≥ 3.1.2
  • LicenseGPL-2
  • Needs compilation?No
  • Last release02/18/2023

Documentation


Team


Insights

Last 30 days

This package has been downloaded 890 times in the last 30 days. More downloads than an obscure whitepaper, but not enough to bring down any servers. A solid effort! The following heatmap shows the distribution of downloads per day. Yesterday, it was downloaded 25 times.

Sun
Mon
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Thu
Fri
Sat
0 downloadsFeb 9, 2025
0 downloadsFeb 10, 2025
0 downloadsFeb 11, 2025
39 downloadsFeb 12, 2025
32 downloadsFeb 13, 2025
22 downloadsFeb 14, 2025
19 downloadsFeb 15, 2025
9 downloadsFeb 16, 2025
45 downloadsFeb 17, 2025
41 downloadsFeb 18, 2025
40 downloadsFeb 19, 2025
29 downloadsFeb 20, 2025
31 downloadsFeb 21, 2025
11 downloadsFeb 22, 2025
12 downloadsFeb 23, 2025
43 downloadsFeb 24, 2025
13 downloadsFeb 25, 2025
15 downloadsFeb 26, 2025
29 downloadsFeb 27, 2025
52 downloadsFeb 28, 2025
27 downloadsMar 1, 2025
17 downloadsMar 2, 2025
23 downloadsMar 3, 2025
38 downloadsMar 4, 2025
53 downloadsMar 5, 2025
76 downloadsMar 6, 2025
23 downloadsMar 7, 2025
16 downloadsMar 8, 2025
21 downloadsMar 9, 2025
23 downloadsMar 10, 2025
28 downloadsMar 11, 2025
38 downloadsMar 12, 2025
25 downloadsMar 13, 2025
0 downloadsMar 14, 2025
0 downloadsMar 15, 2025
9
76

The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.

Last 365 days

This package has been downloaded 9,113 times in the last 365 days. That's a lot of interest! Someone might even write a blog post about it. The day with the most downloads was Nov 04, 2024 with 91 downloads.

The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.

Data provided by CRAN


Binaries


Dependencies

  • Imports12 packages
  • Suggests1 package