gcplyr
Wrangle and Analyze Growth Curve Data
Easy wrangling and model-free analysis of microbial growth curve data, as commonly output by plate readers. Tools for reshaping common plate reader outputs into 'tidy' formats and merging them with design information, making data easy to work with using 'gcplyr' and other packages. Also streamlines common growth curve processing steps, like smoothing and calculating derivatives, and facilitates model-free characterization and analysis of growth data. See methods at https://mikeblazanin.github.io/gcplyr/.
- Version1.11.0
- R versionR (≥ 2.10)
- LicenseMIT
- Needs compilation?No
- gcplyr citation info
- Last release01/17/2025
Documentation
- VignetteIntroduction to using gcplyr
- VignetteImporting and reshaping data
- VignetteIncorporating experimental designs
- VignettePre-processing and plotting data
- VignetteProcessing data
- VignetteAnalyzing data
- VignetteDealing with noise
- VignetteBest practices and other tips
- VignetteWorking with multiple plates
- VignetteUsing make_design to generate experimental designs
- MaterialREADME
- MaterialNEWS
Team
Mike Blazanin
MaintainerShow author details
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Data provided by CRAN
Binaries
Dependencies
- Imports3 packages
- Suggests10 packages