geneSLOPE
Genome-Wide Association Study with SLOPE
Genome-wide association study (GWAS) performed with SLOPE, short for Sorted L-One Penalized Estimation, a method for estimating the vector of coefficients in a linear model. In the first step of GWAS, single nucleotide polymorphisms (SNPs) are clumped according to their correlations and distances. Then, SLOPE is performed on the data where each clump has one representative. Malgorzata Bogdan, Ewout van den Berg, Chiara Sabatti, Weijie Su and Emmanuel Candes (2014) "SLOPE - Adaptive Variable Selection via Convex Optimization"
- Version0.38.2
- R version≥ 3.1.3
- LicenseGPL-3
- Needs compilation?No
- Last release08/16/2023
Documentation
Team
Piotr Sobczyk
Damian Brzyski
Show author detailsRolesAuthorChristine Peterson
Show author detailsRolesAuthorEmmanuel J. Candes
Show author detailsRolesAuthorMalgorzata Bogdan
Show author detailsRolesAuthorChiara Sabatti
Show author detailsRolesAuthor
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- Depends2 packages
- Imports5 packages
- Suggests4 packages