geneset

Gene sets are fundamental for gene enrichment analysis. The package 'geneset' enables querying gene sets from public databases including 'GO' (doi:10.1093/nar/gkh036), 'KEGG' (doi:10.1093/nar/28.1.27), 'WikiPathway' (doi:10.1093/nar/gkaa1024), 'MsigDb' (doi:10.1016/j.cels.2015.12.004), 'Reactome' (doi:10.1093/nar/gkq1018), 'MeSH' (doi:10.4103/0019-5413.139827), 'DisGeNET' (doi:10.1093/nar/gkw943), 'Disease Ontology' (doi:10.1093/nar/gkr972), 'Network of Cancer Genes' (doi:10.1186/s13059-018-1612-0) and 'COVID-19' (doi:10.21203/rs.3.rs-28582/v1). Gene sets are stored in the list object which provides data frame of 'geneset' and 'geneset_name'. The 'geneset' has two columns of term ID and gene ID. The 'geneset_name' has two columns of terms ID and term description.

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