CRAN/E | gscramble

gscramble

Simulating Admixed Genotypes Without Replacement

Installation

About

A genomic simulation approach for creating biologically informed individual genotypes from empirical data that 1) samples alleles from populations without replacement, 2) segregates alleles based on species-specific recombination rates. 'gscramble' is a flexible simulation approach that allows users to create pedigrees of varying complexity in order to simulate admixed genotypes. Furthermore, it allows users to track haplotype blocks from the source populations through the pedigrees.

github.com/eriqande/gscramble
Bug report File report

Key Metrics

Version 1.0.1
R ≥ 3.5.0
Published 2024-02-28 195 days ago
Needs compilation? no
License CC0
CRAN checks gscramble results

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Maintainer

Maintainer

Eric C. Anderson

Authors

Eric C. Anderson

aut / cre

Rachael M. Giglio

aut

Matt G. DeSaix

aut

Timothy J. Smyser

aut

Material

README
NEWS
Reference manual
Package source

Vignettes

Pedigrees Available from create_GSP()
A first tutorial for 'gscramble'
Permutation Options in 'gscramble'

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-develnot available

x86_64

r-releasenot available

x86_64

r-oldrelnot available

x86_64

Depends

R ≥ 3.5.0

Imports

dplyr
ggplot2
glue
magrittr
purrr
readr
rlang
stats
stringr
tibble
tidyr

Suggests

cowplot
knitr
rmarkdown
tidyverse