CRAN/E | gwid

gwid

Genome-Wide Identity-by-Descent

Installation

About

Methods and tools for the analysis of Genome Wide Identity-by-Descent ('gwid') mapping data, focusing on testing whether there is a higher occurrence of Identity-By-Descent (IBD) segments around potential causal variants in cases compared to controls, which is crucial for identifying rare variants. To enhance its analytical power, 'gwid' incorporates a Sliding Window Approach, allowing for the detection and analysis of signals from multiple Single Nucleotide Polymorphisms (SNPs).

github.com/soroushmdg/gwid
Bug report File report

Key Metrics

Version 0.1.0
Published 2023-12-14 271 days ago
Needs compilation? no
License MIT
License File
CRAN checks gwid results

Downloads

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Maintainer

Maintainer

Soroush Mahmoudiandehkordi

Authors

Soroush Mahmoudiandehkordi

aut / cre

Mehdi Maadooliat

aut

Steven Schrodi

aut

Material

README
NEWS
Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-develnot available

x86_64

r-releasenot available

x86_64

r-oldrelnot available

x86_64

Imports

data.table
gdsfmt
SNPRelate
Matrix
ggplot2
plotly
utils
stats
RcppRoll
methods
piggyback

Suggests

knitr
magrittr
rmarkdown
testthat ≥ 3.0.0