hagis
Analysis of Plant Pathogen Pathotype Complexities, Distributions and Diversity
Analysis of plant pathogen pathotype survey data. Functions provided calculate distribution of susceptibilities, distribution of complexities with statistics, pathotype frequency distribution, as well as diversity indices for pathotypes. This package is meant to be a direct replacement for Herrmann, Löwer and Schachtel's (1999) doi:10.1046/j.1365-3059.1999.00325.x Habgood-Gilmour Spreadsheet, 'HaGiS', previously used for pathotype analysis.
- Version4.0.0
- R versionR (≥ 3.4.0)
- LicenseMIT
- Needs compilation?No
- Languageen-US
- hagis citation info
- Last release07/26/2025
Documentation
Team
Adam H. Sparks
MaintainerShow author detailsGRDC Project DAQ00186
Show author detailsRolesfndProject GREEEN
Show author detailsRolesfnd, Copyright holderAustin G. McCoy
Michigan Soybean Promotion Committee
Show author detailsRolesfnd, Copyright holderZhian N. Kamvar
North Central Soybean Research Program
Show author detailsRolesfnd, Copyright holderGrains Research and Development Corporation
Martin Chilvers
Zachary Noel
Jari Oksanen
Show author detailsRolesAuthorUniversity of Southern Queensland
Curtin University
Michigan State University
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Dependencies
- Imports3 packages
- Suggests8 packages