CRAN/E | haplotyper

haplotyper

Tool for Clustering Genotypes in Haplotypes

Installation

About

Function to identify haplotypes within QTL (Quantitative Trait Loci). One haplotype is a combination of SNP (Single Nucleotide Polymorphisms) within the QTL. This function groups together all individuals of a population with the same haplotype. Each group contains individual with the same allele in each SNP, whether or not missing data. Thus, haplotyper groups individuals, that to be imputed, have a non-zero probability of having the same alleles in the entire sequence of SNP's. Moreover, haplotyper calculates such probability from relative frequencies.

Key Metrics

Version 0.1
R ≥ 2.10
Published 2016-04-06 3086 days ago
Needs compilation? no
License GPL-3
CRAN checks haplotyper results

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Maintainer

Maintainer

Gaston Quero

Authors

Sebastian Simondi
Gaston Quero
Victoria Bonnecarrere
Lucia Gutierrez

Material

Reference manual
Package source

Vignettes

Use haplotyper

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Depends

R ≥ 2.10

Imports

graphics
utils

Suggests

knitr
rmarkdown
testthat