haplotyper

Tool for Clustering Genotypes in Haplotypes

CRAN Package

Function to identify haplotypes within QTL (Quantitative Trait Loci). One haplotype is a combination of SNP (Single Nucleotide Polymorphisms) within the QTL. This function groups together all individuals of a population with the same haplotype. Each group contains individual with the same allele in each SNP, whether or not missing data. Thus, haplotyper groups individuals, that to be imputed, have a non-zero probability of having the same alleles in the entire sequence of SNP's. Moreover, haplotyper calculates such probability from relative frequencies.

  • Version0.1
  • R version≥ 2.10
  • LicenseGPL-3
  • Needs compilation?No
  • Last release04/06/2016

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