hisse
Hidden State Speciation and Extinction
Sets up and executes a HiSSE model (Hidden State Speciation and Extinction) on a phylogeny and character sets to test for hidden shifts in trait dependent rates of diversification. Beaulieu and O'Meara (2016) doi:10.1093/sysbio/syw022.
- Version2.1.11
- R versionunknown
- LicenseGPL-2
- LicenseGPL-3
- Needs compilation?Yes
- hisse citation info
- Last release02/11/2023
Documentation
- VignetteThe Problem with Clade-specific Sampling Fractions
- VignetteRunning GeoHiSSE
- VignetteRunning MiSSE
- VignetteRunning MuHiSSE
- VignetteIncorporating Fossils in HiSSE, MuHiSSE, and MiSSE
- VignetteType I errors, Model rejection, & HiSSE vs. FiSSE
- VignetteA newer, faster HiSSE function
- VignetteRunning the old HiSSE function
- In ViewsPhylogenetics
Team
Jeremy Beaulieu
Daniel Caetano
Show author detailsRolesAuthorBrian O'Meara
Show author detailsRolesAuthorJames Boyko
Show author detailsRolesAuthorThais Vasconcelos
Show author detailsRolesAuthor
Insights
Last 30 days
This package has been downloaded 859 times in the last 30 days. This could be a paper that people cite without reading. Reaching the medium popularity echelon is no small feat! The following heatmap shows the distribution of downloads per day. Yesterday, it was downloaded 14 times.
The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.
Last 365 days
This package has been downloaded 9,135 times in the last 365 days. That's a lot of interest! Someone might even write a blog post about it. The day with the most downloads was Mar 01, 2025 with 119 downloads.
The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.
Data provided by CRAN
Binaries
Dependencies
- Depends5 packages
- Imports10 packages
- Suggests4 packages
- Reverse Suggests1 package