hwde

Models and Tests for Departure from Hardy-Weinberg Equilibrium and Independence Between Loci

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Fits models for genotypic disequilibria, as described in Huttley and Wilson (2000) doi:10.1093/genetics/156.4.2127, Weir (1996) and Weir and Wilson (1986). Contrast terms are available that account for first order interactions between loci. Also implements, for a single locus in a single population, a conditional exact test for Hardy-Weinberg equilibrium.


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