CRAN/E | iTOP

iTOP

Inferring the Topology of Omics Data

Installation

About

Infers a topology of relationships between different datasets, such as multi-omics and phenotypic data recorded on the same samples. We based this methodology on the RV coefficient (Robert & Escoufier, 1976, doi:10.2307/2347233), a measure of matrix correlation, which we have extended for partial matrix correlations and binary data (Aben et al., 2018, doi:10.1101/293993).

Key Metrics

Version 1.0.2
Published 2018-06-13 2288 days ago
Needs compilation? no
License GPL-2
CRAN checks iTOP results

Downloads

Yesterday 0
Last 7 days 57 0%
Last 30 days 180 -13%
Last 90 days 565 +21%
Last 365 days 2.144 -0%

Maintainer

Maintainer

Nanne Aben

Authors

Nanne Aben

Material

NEWS
Reference manual
Package source

Vignettes

A quick introduction to iTOP

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

iTOP archive

Imports

Matrix
corpcor

Suggests

knitr
rmarkdown
NMF
pcalg
Rgraphviz