immunarch

Bioinformatics Analysis of T-Cell and B-Cell Immune Repertoires

CRAN Package

A comprehensive framework for bioinformatics exploratory analysis of bulk and single-cell T-cell receptor and antibody repertoires. It provides seamless data loading, analysis and visualisation for AIRR (Adaptive Immune Receptor Repertoire) data, both bulk immunosequencing (RepSeq) and single-cell sequencing (scRNAseq). Immunarch implements most of the widely used AIRR analysis methods, such as: clonality analysis, estimation of repertoire similarities in distribution of clonotypes and gene segments, repertoire diversity analysis, annotation of clonotypes using external immune receptor databases and clonotype tracking in vaccination and cancer studies. A successor to our previously published 'tcR' immunoinformatics package (doi:10.1186/s12859-015-0613-1).


Documentation


Team


Insights

Last 30 days

This package has been downloaded 711 times in the last 30 days. Not bad! The download count is somewhere between 'small-town buzz' and 'moderate academic conference'. The following heatmap shows the distribution of downloads per day. Yesterday, it was downloaded 24 times.

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Tue
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Sat
0 downloadsMar 2, 2025
0 downloadsMar 3, 2025
0 downloadsMar 4, 2025
50 downloadsMar 5, 2025
21 downloadsMar 6, 2025
28 downloadsMar 7, 2025
13 downloadsMar 8, 2025
9 downloadsMar 9, 2025
25 downloadsMar 10, 2025
26 downloadsMar 11, 2025
17 downloadsMar 12, 2025
28 downloadsMar 13, 2025
12 downloadsMar 14, 2025
28 downloadsMar 15, 2025
12 downloadsMar 16, 2025
24 downloadsMar 17, 2025
26 downloadsMar 18, 2025
24 downloadsMar 19, 2025
33 downloadsMar 20, 2025
23 downloadsMar 21, 2025
26 downloadsMar 22, 2025
25 downloadsMar 23, 2025
32 downloadsMar 24, 2025
22 downloadsMar 25, 2025
14 downloadsMar 26, 2025
18 downloadsMar 27, 2025
47 downloadsMar 28, 2025
16 downloadsMar 29, 2025
18 downloadsMar 30, 2025
19 downloadsMar 31, 2025
33 downloadsApr 1, 2025
18 downloadsApr 2, 2025
24 downloadsApr 3, 2025
0 downloadsApr 4, 2025
0 downloadsApr 5, 2025
9
50

The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.

Last 365 days

This package has been downloaded 10,563 times in the last 365 days. The downloads are officially high enough to crash an underfunded departmental server. Quite an accomplishment! The day with the most downloads was Apr 10, 2024 with 70 downloads.

The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.

Data provided by CRAN


Binaries


Dependencies

  • Depends5 packages
  • Imports38 packages
  • Suggests6 packages
  • Linking To1 package