immunarch
Bioinformatics Analysis of T-Cell and B-Cell Immune Repertoires
A comprehensive framework for bioinformatics exploratory analysis of bulk and single-cell T-cell receptor and antibody repertoires. It provides seamless data loading, analysis and visualisation for AIRR (Adaptive Immune Receptor Repertoire) data, both bulk immunosequencing (RepSeq) and single-cell sequencing (scRNAseq). Immunarch implements most of the widely used AIRR analysis methods, such as: clonality analysis, estimation of repertoire similarities in distribution of clonotypes and gene segments, repertoire diversity analysis, annotation of clonotypes using external immune receptor databases and clonotype tracking in vaccination and cancer studies. A successor to our previously published 'tcR' immunoinformatics package (doi:10.1186/s12859-015-0613-1).
- Version0.9.1
- R versionunknown
- LicenseApache License (== 2.0)
- Needs compilation?Yes
- Last release03/18/2024
Documentation
Team
Vadim I. Nazarov
Vasily O. Tsvetkov
Show author detailsRolesAuthorSiarhei Fiadziushchanka
Show author detailsRolesAuthorEugene Rumynskiy
Show author detailsRolesAuthorAleksandr A. Popov
Show author detailsRolesAuthorIvan Balashov
Show author detailsRolesAuthorMaria Samokhina
Show author detailsRolesAuthorAnna Lorenc
Show author detailsRolesContributorDaniel J. Moore
Show author detailsRolesContributorVictor Greiff
Show author detailsRolesContributorImmunoMind
Show author detailsRolesCopyright holder, fnd
Insights
Last 30 days
This package has been downloaded 711 times in the last 30 days. Not bad! The download count is somewhere between 'small-town buzz' and 'moderate academic conference'. The following heatmap shows the distribution of downloads per day. Yesterday, it was downloaded 24 times.
The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.
Last 365 days
This package has been downloaded 10,563 times in the last 365 days. The downloads are officially high enough to crash an underfunded departmental server. Quite an accomplishment! The day with the most downloads was Apr 10, 2024 with 70 downloads.
The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.
Data provided by CRAN
Binaries
Dependencies
- Depends5 packages
- Imports38 packages
- Suggests6 packages
- Linking To1 package