CRAN/E | iq

iq

Protein Quantification in Mass Spectrometry-Based Proteomics

Installation

About

An implementation of the MaxLFQ algorithm by Cox et al. (2014) doi:10.1074/mcp.M113.031591 in a comprehensive pipeline for processing proteomics data in data-independent acquisition mode (Pham et al. 2020 doi:10.1093/bioinformatics/btz961). It offers additional options for protein quantification using the N most intense fragment ions, using all fragment ions, and a wrapper for the median polish algorithm by Tukey (1977, ISBN:0201076160). In general, the tool can be used to integrate multiple proportional observations into a single quantitative value.

Citation iq citation info
github.com/tvpham/iq
Bug report File report

Key Metrics

Version 1.9.12
R ≥ 2.10
Published 2023-12-06 279 days ago
Needs compilation? yes
License BSD_3_clause
License File
CRAN checks iq results

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Maintainer

Maintainer

Thang Pham

Authors

Thang Pham

aut / cre / cph / ctb

Alex Henneman

ctb

Material

Reference manual
Package source

In Views

Omics

Vignettes

Fast MaxLFQ
iq: an R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

iq archive

Depends

R ≥ 2.10

Suggests

knitr
rmarkdown

LinkingTo

Rcpp
RcppEigen

Reverse Suggests

protti