isotracer
Isotopic Tracer Analysis Using MCMC
Implements Bayesian models to analyze data from tracer addition experiments. The implemented method was originally described in the article "A New Method to Reconstruct Quantitative Food Webs and Nutrient Flows from Isotope Tracer Addition Experiments" by López-Sepulcre et al. (2020)
- Version1.1.7
- R version≥ 3.6.0
- LicenseGPL-3
- Needs compilation?Yes
- isotracer citation info
- Last release11/05/2024
Documentation
- VignetteCase study: Trinidadian streams (Collins et al. 2016)
- Vignettesource
- VignetteQuick start
- Vignettesource
- VignetteHandling replication
- Vignettesource
- VignetteSetting steady-state compartments
- Vignettesource
- VignetteDefining pulse or drip events
- Vignettesource
- VignetteIncluding fixed effects of covariates
- Vignettesource
- VignetteUnits and priors
- Vignettesource
- VignettePrior predictive checks
- Vignettesource
- VignetteMCMC output format
- Vignettesource
- VignettePost-run diagnostics and analyses
- Vignettesource
- VignettePosterior predictive checks
- Vignettesource
- VignetteCalculating derived parameters
- Vignettesource
- VignetteHow to simulate experiments
- Vignettesource
- VignetteTesting parameter identifiability
- Vignettesource
- MaterialREADME
- MaterialNEWS
Team
Matthieu Bruneaux
Andrés López-Sepulcre
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Dependencies
- Depends1 package
- Imports15 packages
- Suggests17 packages
- Linking To6 packages