kibior

An interface to store, retrieve, search, join and share datasets, based on Elasticsearch (ES) API. As a decentralized, FAIR and collaborative search engine and database effort, it proposes a simple push/pull/search mechanism only based on ES, a tool which can be deployed on nearly any hardware. It is a high-level R-ES binding to ease data usage using 'elastic' package (S. Chamberlain (2020)) https://docs.ropensci.org/elastic/, extends joins from 'dplyr' package (H. Wickham et al. (2020)) https://dplyr.tidyverse.org/ and integrates specific biological format importation with Bioconductor packages such as 'rtracklayer' (M. Lawrence and al. (2009) doi:10.1093/bioinformatics/btp328) http://bioconductor.org/packages/rtracklayer, 'Biostrings' (H. Pagès and al. (2020) doi:10.18129/B9.bioc.Biostrings) http://bioconductor.org/packages/Biostrings, and 'Rsamtools' (M. Morgan and al. (2020) doi:10.18129/B9.bioc.Rsamtools) http://bioconductor.org/packages/Rsamtools, but also a long list of more common ones with 'rio' (C-h. Chan and al. (2018)) https://cran.r-project.org/package=rio.

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