landsepi
Landscape Epidemiology and Evolution
A stochastic, spatially-explicit, demo-genetic model simulating the spread and evolution of a plant pathogen in a heterogeneous landscape to assess resistance deployment strategies. It is based on a spatial geometry for describing the landscape and allocation of different cultivars, a dispersal kernel for the dissemination of the pathogen, and a SEIR ('Susceptible-Exposed-Infectious-Removed’) structure with a discrete time step. It provides a useful tool to assess the performance of a wide range of deployment options with respect to their epidemiological, evolutionary and economic outcomes. Loup Rimbaud, Julien Papaïx, Jean-François Rey, Luke G Barrett, Peter H Thrall (2018) doi:10.1371/journal.pcbi.1006067.
- Version1.5.1
- R versionunknown
- LicenseGPL-2
- LicenseGPL-3
- LicenseLICENSE
- Needs compilation?Yes
- landsepi citation info
- Last release09/23/2024
Documentation
- Vignette1 - Running a simple simulation
- Vignette2 - Running a numerical experimental design
- Vignette3 - Parameterising landscape and dispersal
- Vignette4 - Running a simple simulation with a pathogen with mixed reproduction system
- VignetteLandsepi - Bibliography
- Vignette6 - Poster
- Vignette5 - list of parameters
- MaterialNEWS
- In ViewsAgriculture
Team
Jean-François Rey
Loup Rimbaud
Marta Zaffaroni
Julien Papaix
Show author detailsRolesAuthorJean-Loup Gaussen
Show author detailsRolesContributorManon Couty
Show author detailsRolesContributor
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- Depends1 package
- Imports11 packages
- Suggests6 packages
- Linking To2 packages