CRAN/E | limorhyde2

limorhyde2

Quantify Rhythmicity and Differential Rhythmicity in Genomic Data

Installation

About

Fit linear models based on periodic splines, moderate model coefficients using multivariate adaptive shrinkage, then compute properties of the moderated curves.

limorhyde2.hugheylab.org
github.com/hugheylab/limorhyde2

Key Metrics

Version 0.1.0
R ≥ 3.6
Published 2023-01-26 592 days ago
Needs compilation? no
License GPL-2
CRAN checks limorhyde2 results

Downloads

Yesterday 9 0%
Last 7 days 67 +2%
Last 30 days 297 -3%
Last 90 days 860 +7%
Last 365 days 3.361 +19%

Maintainer

Maintainer

Jake Hughey

[email protected]

Authors

Jake Hughey

aut / cre

Dora Obodo

aut

Elliot Outland

aut

Material

NEWS
Reference manual
Package source

Vignettes

Quantifying differential rhythmicity between conditions
Quantifying rhythmicity in one condition
Analyzing RNA-seq data
Quantifying uncertainty in (differential) rhythmicity

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

limorhyde2 archive

Depends

R ≥ 3.6

Imports

abind ≥ 1.4-5
ashr ≥ 2.2-54
checkmate ≥ 2.0.0
data.table ≥ 1.12.8
DESeq2 ≥ 1.30.0
foreach ≥ 1.5.0
HDInterval ≥ 0.2.2
iterators ≥ 1.0.12
limma ≥3.42.2
mashr ≥ 0.2.50
pbs ≥ 1.1
zeallot ≥ 0.1.0

Suggests

cowplot ≥ 1.1.1
knitr
doParallel ≥ 1.0.15
ggplot2 ≥ 3.3.5
glue ≥ 1.6.1
qs ≥ 0.24.1
rmarkdown
testthat ≥ 3.0.0