CRAN/E | locuszoomr

locuszoomr

Gene Locus Plot with Gene Annotations

Installation

About

Publication-ready regional gene locus plots similar to those produced by the web interface 'LocusZoom' , but running locally in R. Genetic or genomic data with gene annotation tracks are plotted via R base graphics, 'ggplot2' or 'plotly', allowing flexibility and easy customisation including laying out multiple locus plots on the same page. It uses the 'LDlink' API to query linkage disequilibrium data from the 1000 Genomes Project and can overlay this on plots.

github.com/myles-lewis/locuszoomr
Bug report File report

Key Metrics

Version 0.3.0
R ≥ 3.5
Published 2024-04-16 154 days ago
Needs compilation? no
License GPL (≥ 3)
CRAN checks locuszoomr results
Language en-gb

Downloads

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Maintainer

Maintainer

Myles Lewis

[email protected]

Authors

Myles Lewis

aut / cre

Material

README
NEWS
Reference manual
Package source

Vignettes

locuszoomr

macOS

r-prerel

arm64

r-release

arm64

r-oldrel

arm64

r-prerel

x86_64

r-release

x86_64

Windows

r-prerel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

locuszoomr archive

Depends

R ≥ 3.5

Imports

AnnotationFilter
BiocGenerics
cowplot
dplyr
ensembldb
GenomeInfoDb
GenomicRanges
gggrid
ggplot2
ggrepel
graphics
grDevices
grid
IRanges
LDlinkR
memoise
plotly
rlang
rtracklayer
zoo

Suggests

AnnotationHub
EnsDb.Hsapiens.v75
knitr
rmarkdown