longreadvqs

Performs variety of viral quasispecies diversity analyses [see Gregori et al. (2016) doi:10.1016/j.virol.2016.03.017] based on long-read sequence alignment. Main functions include 1) sequencing error minimization and read sampling, 2) Single nucleotide variant (SNV) profiles comparison, and 3) viral quasispecies profiles comparison and visualization.