modelSSE

Modelling Infectious Disease Superspreading from Contact Tracing Data

CRAN Package

Comprehensive analytical tools are provided to characterize infectious disease superspreading from contact tracing surveillance data. The underlying theoretical frameworks of this toolkit include branching process with transmission heterogeneity (Lloyd-Smith et al. (2005) doi:10.1038/nature04153), case cluster size distribution (Nishiura et al. (2012) doi:10.1016/j.jtbi.2011.10.039, Blumberg et al. (2014) doi:10.1371/journal.ppat.1004452, and Kucharski and Althaus (2015) doi:10.2807/1560-7917.ES2015.20.25.21167), and decomposition of reproduction number (Zhao et al. (2022) doi:10.1371/journal.pcbi.1010281).

  • Version0.1-3
  • R version≥ 3.0.0
  • LicenseGPL-3
  • Needs compilation?No
  • Last release09/07/2023

Documentation


Team


Insights

Last 30 days

This package has been downloaded 176 times in the last 30 days. Now we're getting somewhere! Enough downloads to populate a lively group chat. The following heatmap shows the distribution of downloads per day. Yesterday, it was downloaded 8 times.

Sun
Mon
Tue
Wed
Thu
Fri
Sat
0 downloadsMar 2, 2025
0 downloadsMar 3, 2025
7 downloadsMar 4, 2025
10 downloadsMar 5, 2025
4 downloadsMar 6, 2025
3 downloadsMar 7, 2025
1 downloadsMar 8, 2025
2 downloadsMar 9, 2025
5 downloadsMar 10, 2025
8 downloadsMar 11, 2025
8 downloadsMar 12, 2025
3 downloadsMar 13, 2025
3 downloadsMar 14, 2025
8 downloadsMar 15, 2025
3 downloadsMar 16, 2025
4 downloadsMar 17, 2025
9 downloadsMar 18, 2025
6 downloadsMar 19, 2025
9 downloadsMar 20, 2025
9 downloadsMar 21, 2025
8 downloadsMar 22, 2025
7 downloadsMar 23, 2025
6 downloadsMar 24, 2025
12 downloadsMar 25, 2025
3 downloadsMar 26, 2025
5 downloadsMar 27, 2025
8 downloadsMar 28, 2025
7 downloadsMar 29, 2025
3 downloadsMar 30, 2025
3 downloadsMar 31, 2025
4 downloadsApr 1, 2025
8 downloadsApr 2, 2025
0 downloadsApr 3, 2025
0 downloadsApr 4, 2025
0 downloadsApr 5, 2025
1
12

The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.

Last 365 days

This package has been downloaded 2,643 times in the last 365 days. Consider this 'mid-tier influencer' status—if it were a TikTok, it would get a nod from nieces and nephews. The day with the most downloads was Jul 21, 2024 with 197 downloads.

The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.

Data provided by CRAN


Binaries


Dependencies

  • Imports1 package