CRAN/E | mppR

mppR

Multi-Parent Population QTL Analysis

Installation

About

Analysis of experimental multi-parent populations to detect regions of the genome (called quantitative trait loci, QTLs) influencing phenotypic traits measured in unique and multiple environments. The population must be composed of crosses between a set of at least three parents (e.g. factorial design, 'diallel', or nested association mapping). The functions cover data processing, QTL detection, and results visualization. The implemented methodology is described in Garin, Wimmer, Mezmouk, Malosetti and van Eeuwijk (2017) doi:10.1007/s00122-017-2923-3, in Garin, Malosetti and van Eeuwijk (2020) doi:10.1007/s00122-020-03621-0, and in Garin, Diallo, Tekete, Thera, ..., and Rami (2024) doi:10.1093/genetics/iyae003.

Citation mppR citation info
github.com/vincentgarin/mppR
Bug report File report

Key Metrics

Version 1.5.0
R ≥ 3.1.0
Published 2024-02-22 228 days ago
Needs compilation? no
License GPL-3
CRAN checks mppR results

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Maintainer

Maintainer

Vincent Garin

Authors

Vincent Garin

aut / cre

Valentin Wimmer

aut

Dietrich Borchardt

ctb / dtc

Fred van Eeuwijk

ctb / ths

Marcos Malosetti

ctb / ths

Material

README
NEWS
Reference manual
Package source

Vignettes

QTL detection in multiparental populations characterized in multiple environments
mppR: An R Package for QTL Analysis in Multi-parent Populations

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

mppR archive

Depends

R ≥ 3.1.0

Imports

dplyr
ggplot2
graphics
grDevices
igraph
Matrix
methods
nlme
parallel
qtl
stats
utils

Suggests

knitr
rmarkdown
testthat