CRAN/E | mrMLM.GUI

mrMLM.GUI

Multi-Locus Random-SNP-Effect Mixed Linear Model Tools for Genome-Wide Association Study with Graphical User Interface

Installation

About

Conduct multi-locus genome-wide association study under the framework of multi-locus random-SNP-effect mixed linear model (mrMLM). First, each marker on the genome is scanned. Bonferroni correction is replaced by a less stringent selection criterion for significant test. Then, all the markers that are potentially associated with the trait are included in a multi-locus genetic model, their effects are estimated by empirical Bayes and all the nonzero effects were further identified by likelihood ratio test for true QTL. Wen YJ, Zhang H, Ni YL, Huang B, Zhang J, Feng JY, Wang SB, Dunwell JM, Zhang YM, Wu R (2018) doi:10.1093/bib/bbw145.

Key Metrics

Version 4.0.2
R ≥ 3.5.0
Published 2020-10-08 1464 days ago
Needs compilation? yes
License GPL-2
License GPL-3
CRAN checks mrMLM.GUI results

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Maintainer

Maintainer

Yuanming Zhan

Authors

Zhang Ya-Wen
Li Pei
Zhang Yuan-Ming

Material

Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

mrMLM.GUI archive

Depends

R ≥ 3.5.0
shiny
lars

Imports

Rcpp ≥0.12.14
methods
foreach
ncvreg
coin
shinyjs
data.table
doParallel
sampling
bigmemory
mrMLM
sbl

LinkingTo

Rcpp
RcppEigen