mutationtypes

Check concordance of a vector of mutation impacts with standard dictionaries such as Sequence Ontology (SO) http://www.sequenceontology.org/, Mutation Annotation Format (MAF) https://docs.gdc.cancer.gov/Encyclopedia/pages/Mutation_Annotation_Format_TCGAv2/ or Prediction and Annotation of Variant Effects (PAVE) https://github.com/hartwigmedical/hmftools/tree/master/pave. It enables conversion between SO/PAVE and MAF terms and selection of the most severe consequence where multiple ampersand (&) delimited impacts are given.

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