CRAN/E | mutationtypes

mutationtypes

Validate and Convert Mutational Impacts Using Standard Genomic Dictionaries

Installation

About

Check concordance of a vector of mutation impacts with standard dictionaries such as Sequence Ontology (SO) , Mutation Annotation Format (MAF) or Prediction and Annotation of Variant Effects (PAVE) . It enables conversion between SO/PAVE and MAF terms and selection of the most severe consequence where multiple ampersand (&) delimited impacts are given.

github.com/selkamand/mutationtypes
Bug report File report

Key Metrics

Version 0.0.1
Published 2023-12-14 316 days ago
Needs compilation? no
License LGPL (≥ 3)
CRAN checks mutationtypes results

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Maintainer

Maintainer

Sam El-Kamand

Authors

Sam El-Kamand

aut / cre

Children's Cancer Institute Australia

cph

Material

README
Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-develnot available

x86_64

r-releasenot available

x86_64

r-oldrelnot available

x86_64

Imports

assertions
cli
data.table
stats
utils

Suggests

covr
testthat ≥ 3.0.0