CRAN/E | nanostringr

nanostringr

Performs Quality Control, Data Normalization, and Batch Effect Correction for 'NanoString nCounter' Data

Installation

About

Provides quality control (QC), normalization, and batch effect correction operations for 'NanoString nCounter' data, Talhouk et al. (2016) doi:10.1371/journal.pone.0153844. Various metrics are used to determine which samples passed or failed QC. Gene expression should first be normalized to housekeeping genes, before a reference-based approach is used to adjust for batch effects. Raw NanoString data can be imported in the form of Reporter Code Count (RCC) files.

Citation nanostringr citation info
github.com/TalhoukLab/nanostringr/
talhouklab.github.io/nanostringr/
Bug report File report

Key Metrics

Version 0.4.1
R ≥ 3.5.0
Published 2023-08-15 419 days ago
Needs compilation? no
License MIT
License File
CRAN checks nanostringr results

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Maintainer

Maintainer

Derek Chiu

Authors

Derek Chiu

aut / cre

Aline Talhouk

aut

Samuel Leung

aut

Material

NEWS
Reference manual
Package source

In Views

Omics

Vignettes

nanostringr Package

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

nanostringr archive

Depends

R ≥ 3.5.0

Imports

assertthat
ccaPP
dplyr
purrr
rlang
tidyr

Suggests

covr
knitr
magrittr
rmarkdown
testthat