CRAN/E | nat

nat

NeuroAnatomy Toolbox for Analysis of 3D Image Data

Installation

About

NeuroAnatomy Toolbox (nat) enables analysis and visualisation of 3D biological image data, especially traced neurons. Reads and writes 3D images in NRRD and 'Amira' AmiraMesh formats and reads surfaces in 'Amira' hxsurf format. Traced neurons can be imported from and written to SWC and 'Amira' LineSet and SkeletonGraph formats. These data can then be visualised in 3D via 'rgl', manipulated including applying calculated registrations, e.g. using the 'CMTK' registration suite, and analysed. There is also a simple representation for neurons that have been subjected to 3D skeletonisation but not formally traced; this allows morphological comparison between neurons including searches and clustering (via the 'nat.nblast' extension package).

Citation nat citation info
github.com/natverse/nat
natverse.org/
Bug report File report

Key Metrics

Version 1.8.24
R ≥ 2.15.1
Published 2024-02-05 250 days ago
Needs compilation? no
License GPL-3
CRAN checks nat results

Downloads

Yesterday 14 -56%
Last 7 days 119 -31%
Last 30 days 570 -12%
Last 90 days 1.771 +4%
Last 365 days 7.594 -7%

Maintainer

Maintainer

Gregory Jefferis

Authors

Gregory Jefferis

aut / cre

James Manton

aut

Dominik Krzeminski

ctb

Material

README
NEWS
Reference manual
Package source

Vignettes

Installation Details
Introduction to neurons and neuronlists

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

nat archive

Depends

R ≥ 2.15.1
rgl ≥ 0.98.1

Imports

nabor
igraph ≥ 1.3.0
methods
filehash ≥ 2.3
digest
nat.utils ≥ 0.4.2
plyr
yaml

Suggests

Rvcg ≥ 0.17
testthat
httr
XML
knitr
rmarkdown
markdown
MASS
alphashape3d
webshot2

Reverse Depends

nat.nblast
nat.templatebrains

Reverse Suggests

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