o2geosocial
Reconstruction of Transmission Chains from Surveillance Data
Bayesian reconstruction of who infected whom during past outbreaks using routinely-collected surveillance data. Inference of transmission trees using genotype, age specific social contacts, distance between cases and onset dates of the reported cases. (Robert A, Kucharski AJ, Gastanaduy PA, Paul P, Funk S. (2020)
- Version1.1.3
- R version≥ 3.5.0
- LicenseMIT
- Licensefile LICENSE
- Needs compilation?Yes
- Last release06/21/2024
Documentation
Team
Alexis Robert
Sebastian Funk
Adam J Kucharski
Thibaut Jombart
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- Depends1 package
- Imports9 packages
- Suggests6 packages
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