omicwas

Cell-Type-Specific Association Testing in Bulk Omics Experiments

CRAN Package

In bulk epigenome/transcriptome experiments, molecular expression is measured in a tissue, which is a mixture of multiple types of cells. This package tests association of a disease/phenotype with a molecular marker for each cell type. The proportion of cell types in each sample needs to be given as input. The package is applicable to epigenome-wide association study (EWAS) and differential gene expression analysis. Takeuchi and Kato (submitted) "omicwas: cell-type-specific epigenome-wide and transcriptome association study".

  • Version0.8.0
  • R versionunknown
  • LicenseGPL-3
  • Needs compilation?No
  • Last release10/08/2020

Documentation


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Insights

Last 30 days

This package has been downloaded 214 times in the last 30 days. Enough downloads to make a small wave in the niche community. The curiosity is spreading! The following heatmap shows the distribution of downloads per day. Yesterday, it was downloaded 6 times.

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0 downloadsMar 2, 2025
7 downloadsMar 3, 2025
9 downloadsMar 4, 2025
13 downloadsMar 5, 2025
6 downloadsMar 6, 2025
6 downloadsMar 7, 2025
3 downloadsMar 8, 2025
2 downloadsMar 9, 2025
5 downloadsMar 10, 2025
16 downloadsMar 11, 2025
8 downloadsMar 12, 2025
5 downloadsMar 13, 2025
7 downloadsMar 14, 2025
9 downloadsMar 15, 2025
7 downloadsMar 16, 2025
6 downloadsMar 17, 2025
7 downloadsMar 18, 2025
14 downloadsMar 19, 2025
10 downloadsMar 20, 2025
9 downloadsMar 21, 2025
10 downloadsMar 22, 2025
6 downloadsMar 23, 2025
8 downloadsMar 24, 2025
5 downloadsMar 25, 2025
4 downloadsMar 26, 2025
6 downloadsMar 27, 2025
8 downloadsMar 28, 2025
7 downloadsMar 29, 2025
4 downloadsMar 30, 2025
1 downloadsMar 31, 2025
6 downloadsApr 1, 2025
0 downloadsApr 2, 2025
0 downloadsApr 3, 2025
0 downloadsApr 4, 2025
0 downloadsApr 5, 2025
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The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.

Last 365 days

This package has been downloaded 2,632 times in the last 365 days. Now we’re talking! This work is officially 'heard of in academic circles', just like those wild research papers on synthetic bananas. The day with the most downloads was Sep 11, 2024 with 27 downloads.

The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.

Data provided by CRAN


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Dependencies

  • Imports11 packages
  • Suggests3 packages