outbreaker2
Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data
Bayesian reconstruction of disease outbreaks using epidemiological and genetic information. Jombart T, Cori A, Didelot X, Cauchemez S, Fraser C and Ferguson N. 2014. doi:10.1371/journal.pcbi.1003457. Campbell, F, Cori A, Ferguson N, Jombart T. 2019. doi:10.1371/journal.pcbi.1006930.
- Version1.1.3
- R version≥ 3.5.0
- LicenseMIT
- LicenseLICENSE
- Needs compilation?Yes
- outbreaker2 citation info
- Last release05/23/2022
Documentation
Team
Finlay Campbell
Thibaut Jombart
Show author detailsRolesAuthorAlexis Robert
Show author detailsRolesContributorGerry Tonkin-Hill
Show author detailsRolesContributorRich Fitzjohn
Show author detailsRolesAuthorKristjan Eldjarn
Show author detailsRolesContributor
Insights
Last 30 days
This package has been downloaded 310 times in the last 30 days. More than a random curiosity, but not quite a blockbuster. Still, it's gaining traction! The following heatmap shows the distribution of downloads per day. Yesterday, it was downloaded 3 times.
The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.
Last 365 days
This package has been downloaded 4,128 times in the last 365 days. That's enough downloads to impress a room full of undergrads. A commendable achievement indeed. The day with the most downloads was Jul 17, 2024 with 56 downloads.
The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.
Data provided by CRAN
Binaries
Dependencies
- Imports5 packages
- Suggests8 packages
- Linking To1 package
- Reverse Imports1 package