CRAN/E | paramlink

paramlink

Parametric Linkage and Other Pedigree Analysis in R

Installation

About

NOTE: 'PARAMLINK' HAS BEEN SUPERSEDED BY THE 'PED SUITE' PACKAGES (). 'PARAMLINK' IS MAINTAINED ONLY FOR LEGACY PURPOSES AND SHOULD NOT BE USED IN NEW PROJECTS. A suite of tools for analysing pedigrees with marker data, including parametric linkage analysis, forensic computations, relatedness analysis and marker simulations. The core of the package is an implementation of the Elston-Stewart algorithm for pedigree likelihoods, extended to allow mutations as well as complex inbreeding. Features for linkage analysis include singlepoint LOD scores, power analysis, and multipoint analysis (the latter through a wrapper to the 'MERLIN' software). Forensic applications include exclusion probabilities, genotype distributions and conditional simulations. Data from the 'Familias' software can be imported and analysed in 'paramlink'. Finally, 'paramlink' offers many utility functions for creating, manipulating and plotting pedigrees with or without marker data (the actual plotting is done by the 'kinship2' package).

github.com/magnusdv/paramlink
System requirements For multipoint linkage analysis, 'MERLIN' (http://csg.sph.umich.edu/abecasis/merlin/index.html).
Bug report File report

Key Metrics

Version 1.1-5
R ≥ 3.3
Published 2022-04-15 905 days ago
Needs compilation? no
License GPL-2
License GPL-3
CRAN checks paramlink results
Language en-GB

Downloads

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Maintainer

Maintainer

Magnus Dehli Vigeland

Authors

Magnus Dehli Vigeland

aut / cre

Thore Egeland

ctb

Guro Doerum

ctb

Material

README
NEWS
Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

paramlink archive

Depends

R ≥ 3.3

Imports

assertthat
graphics
kinship2
maxLik
stats
utils

Suggests

igraph

Reverse Depends

IBDsim

Reverse Imports

fbnet