pcmabc

Fits by ABC, the parameters of a stochastic process modelling the phylogeny and evolution of a suite of traits following the tree. The user may define an arbitrary Markov process for the trait and phylogeny. Importantly, trait-dependent speciation models are handled and fitted to data. See K. Bartoszek, P. Lio' (2019) doi:10.5506/APhysPolBSupp.12.25. The suggested geiger package can be obtained from CRAN's archive https://cran.r-project.org/src/contrib/Archive/geiger/, suggested to take latest version. Otherwise its required code is present in the pcmabc package. The suggested distory package can be obtained from CRAN's archive https://cran.r-project.org/src/contrib/Archive/distory/, suggested to take latest version.

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