CRAN/E | pegas

pegas

Population and Evolutionary Genetics Analysis System

Installation

About

Functions for reading, writing, plotting, analysing, and manipulating allelic and haplotypic data, including from VCF files, and for the analysis of population nucleotide sequences and micro-satellites including coalescent analyses, linkage disequilibrium, population structure (Fst, Amova) and equilibrium (HWE), haplotype networks, minimum spanning tree and network, and median-joining networks.

Citation pegas citation info
emmanuelparadis.github.io/pegas.html

Key Metrics

Version 1.3
R ≥ 3.2.0
Published 2023-12-13 295 days ago
Needs compilation? yes
License GPL-2
License GPL-3
CRAN checks pegas results

Downloads

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Maintainer

Maintainer

Emmanuel Paradis

Authors

Emmanuel Paradis

aut / cre / cph

Thibaut Jombart

aut / cph

Zhian N. Kamvar

aut / cph

Brian Knaus

aut / cph

Klaus Schliep

aut / cph

Alastair Potts

aut / cph

David Winter

aut / cph

Material

NEWS
Reference manual
Package source

Vignettes

Plotting Haplotype Networks
Reading Files

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

pegas archive

Depends

R ≥ 3.2.0
ape ≥ 5.3-11

Imports

graphics
utils
methods

Suggests

rgl
snpStats
adegenet

Reverse Depends

StAMPP

Reverse Imports

geneHapR
graph4lg
HACSim
mmod
PopGenReport
poppr
RAINBOWR
spider

Reverse Suggests

adegenet
dartR
dartR.base
hierfstat
pagoo