phangorn
Phylogenetic Reconstruction and Analysis
Allows for estimation of phylogenetic trees and networks using Maximum Likelihood, Maximum Parsimony, distance methods and Hadamard conjugation (Schliep 2011). Offers methods for tree comparison, model selection and visualization of phylogenetic networks as described in Schliep et al. (2017).
- Version2.12.1
- R versionunknown
- LicenseGPL-2
- LicenseGPL-3
- Needs compilation?Yes
- Languageen-US
- phangorn citation info
- Last release09/17/2024
Documentation
- VignetteMarkov models and transition rate matrices
- VignetteAncestral Sequence Reconstruction
- VignetteIntertwining phylogenetic trees and networks: R Example Script
- VignetteMaximum likelihood by hand
- VignettePhylogenetic trees from morphological data
- VignetteSplits and Networx
- VignetteEstimating phylogenetic trees with phangorn
- MaterialREADME
- MaterialNEWS
- In ViewsPhylogenetics
Team
Klaus Schliep
MaintainerShow author detailsJeremy Beaulieu
Show author detailsRolesContributorEmmanuel Paradis
Michelle Kendall
Show author detailsRolesContributorBrian O'Meara
Show author detailsRolesContributorJoseph Brown
Santiago Claramunt
Liam Revell
Show author detailsRolesContributorAlastair Potts
Leonardo de Oliveira Martins
Iris Bardel-Kahr
Tim W. White
Show author detailsRolesContributorCyrill Stachniss
Show author detailsRolesContributorKeren Halabi
Show author detailsRolesContributorRichel Bilderbeek
Show author detailsRolesContributorKristin Winchell
Show author detailsRolesContributorMike Gilchrist
Show author detailsRolesContributorLong Qu
Show author detailsRolesContributor
Insights
Last 30 days
This package has been downloaded 22,736 times in the last 30 days. The downloads are officially high enough to crash an underfunded departmental server. Quite an accomplishment! The following heatmap shows the distribution of downloads per day. Yesterday, it was downloaded 761 times.
The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.
Last 365 days
This package has been downloaded 191,734 times in the last 365 days. Practically an academic rockstar! That's enough downloads to cause murmurs at international conferences. The day with the most downloads was Sep 18, 2024 with 1,965 downloads.
The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.
Data provided by CRAN
Binaries
Dependencies
- Depends1 package
- Imports7 packages
- Suggests12 packages
- Linking To1 package
- Reverse Depends3 packages
- Reverse Imports39 packages
- Reverse Suggests14 packages
- Reverse Enhances1 package