phangorn
Phylogenetic Reconstruction and Analysis
Allows for estimation of phylogenetic trees and networks using Maximum Likelihood, Maximum Parsimony, distance methods and Hadamard conjugation (Schliep 2011). Offers methods for tree comparison, model selection and visualization of phylogenetic networks as described in Schliep et al. (2017).
- Version2.12.1
- R versionunknown
- LicenseGPL-2
- LicenseGPL-3
- Needs compilation?Yes
- Languageen-US
- phangorn citation info
- Last release09/17/2024
Documentation
- VignetteMarkov models and transition rate matrices
- Vignettesource
- VignetteR code
- VignetteAncestral Sequence Reconstruction
- Vignettesource
- VignetteR code
- VignetteIntertwining phylogenetic trees and networks: R Example Script
- Vignettesource
- VignetteR code
- VignetteMaximum likelihood by hand
- Vignettesource
- VignetteR code
- VignettePhylogenetic trees from morphological data
- Vignettesource
- VignetteR code
- VignetteSplits and Networx
- Vignettesource
- VignetteR code
- VignetteEstimating phylogenetic trees with phangorn
- Vignettesource
- VignetteR code
- MaterialREADME
- MaterialNEWS
- In ViewsPhylogenetics
Team
Klaus Schliep
Emmanuel Paradis
Leonardo de Oliveira Martins
Alastair Potts
Show author detailsRolesAuthorIris Bardel-Kahr
Tim W. White
Show author detailsRolesContributorCyrill Stachniss
Show author detailsRolesContributorMichelle Kendall
Show author detailsRolesContributorKeren Halabi
Show author detailsRolesContributorRichel Bilderbeek
Show author detailsRolesContributorKristin Winchell
Show author detailsRolesContributorLiam Revell
Show author detailsRolesContributorMike Gilchrist
Show author detailsRolesContributorJeremy Beaulieu
Show author detailsRolesContributorBrian O'Meara
Show author detailsRolesContributorLong Qu
Show author detailsRolesContributorJoseph Brown
Santiago Claramunt
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Dependencies
- Depends1 package
- Imports13 packages
- Suggests13 packages
- Linking To1 package
- Reverse Depends3 packages
- Reverse Imports43 packages
- Reverse Suggests18 packages
- Reverse Enhances1 package