CRAN/E | phyloseqGraphTest

phyloseqGraphTest

Graph-Based Permutation Tests for Microbiome Data

Installation

About

Provides functions for graph-based multiple-sample testing and visualization of microbiome data, in particular data stored in 'phyloseq' objects. The tests are based on those described in Friedman and Rafsky (1979) , and the tests are described in more detail in Callahan et al. (2016) doi:10.12688/f1000research.8986.1.

github.com/jfukuyama/phyloseqGraphTest

Key Metrics

Version	0.1.1
R	≥ 3.5.0
Published	2024-02-05 247 days ago
Needs compilation?	no
License	CC0
CRAN checks	phyloseqGraphTest results

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Maintainer

Julia Fukuyama

[email protected]

Authors

Julia Fukuyama

aut / cre

Material

Reference manual
Package source

Vignettes

Graph Testing Vignette

macOS

r-release	arm64
r-oldrel	arm64
r-release	x86_64

Windows

r-devel	x86_64
r-release	x86_64
r-oldrel	x86_64

Old Sources

phyloseqGraphTest archive

Depends

R	≥ 3.5.0
ggplot2	≥ 2.2.1
phyloseq	≥ 1.24.0

Imports

ggnetwork	≥ 0.5.1
igraph	≥ 1.1.2

Suggests

knitr
rmarkdown