CRAN/E | plantecowrap

plantecowrap

Enhancing Capabilities of 'plantecophys'

Installation

About

Provides wrapping functions to add to capabilities to 'plantecophys' (Duursma, 2015, doi:10.1371/journal.pone.0143346). Key added capabilities include temperature responses of mesophyll conductance (gm, gmeso), apparent Michaelis-Menten constant for rubisco carboxylation in air (Km, Kcair),and photorespiratory CO2 compensation point (GammaStar) for fitting A-Ci or A-Cc curves for C3 plants (for temperature responses of gm, Km, & GammaStar, see Bernacchi et al., 2002, doi:10.1104/pp.008250; for theory on fitting A-Ci or A-Cc curves, see Farquhar et al., 1980; doi:10.1007/BF00386231, von Caemmerer, 2000, ISBN:064306379X; Ethier & Livingston, 2004 doi:10.1111/j.1365-3040.2004.01140.x; and Gu et al., 2010, doi:10.1111/j.1365-3040.2010.02192.x). Includes the ability to fit the Arrhenius and modified Arrhenius temperature response functions (see Medlyn et al., 2002, doi:10.1046/j.1365-3040.2002.00891.x) for maximum rubisco carboxylation rates (Vcmax) and maximum electron transport rates (Jmax) (see Farquhar et al., 1980; doi:10.1007/BF00386231).

github.com/jstinzi/plantecowrap
Bug report File report

Key Metrics

Version 1.0.4
R ≥ 3.5.0
Published 2020-04-03 1650 days ago
Needs compilation? no
License MIT
License File
CRAN checks plantecowrap results

Downloads

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Maintainer

Maintainer

Joseph Stinziano

Authors

Joseph Stinziano

aut / cre

Demi Gamble

aut

Robert Sharwood

aut

Warren Conaty

aut

Material

Reference manual
Package source

Vignettes

Example_dataset_creation
Using_plantecophystools

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Depends

R ≥ 3.5.0
ggplot2 ≥ 3.2.1
minpack.lm ≥ 1.2-1
plantecophys ≥ 1.4-4
tidyr ≥ 1.0.0

Suggests

knitr
rmarkdown
testthat