pould
Phased or Unphased Linkage Disequilibrium
Computes the D', Wn, and conditional asymmetric linkage disequilibrium (ALD) measures for pairs of genetic loci. Performs these linkage disequilibrium (LD) calculations on phased genotype data recorded using Genotype List (GL) String or columnar formats. Alternatively, generates expectation-maximization (EM) estimated haplotypes from phased data, or performs LD calculations on EM estimated haplotypes. Performs sign tests comparing LD values for phased and unphased datasets, and generates heat-maps for each LD measure. Described by Osoegawa et al. (2019a) doi:10.1016/j.humimm.2019.01.010, and Osoegawa et. al. (2019b) doi:10.1016/j.humimm.2019.05.018.
- Version1.0.1
- R versionunknown
- LicenseGPL (≥ 3)
- Needs compilation?No
- Osoegawa et al. (2019a)
- Osoegawa et. al. (2019b)
- Last release10/16/2020
Documentation
Team
Steven Mack
Insights
Last 30 days
This package has been downloaded 126 times in the last 30 days. More than a random curiosity, but not quite a blockbuster. Still, it's gaining traction! The following heatmap shows the distribution of downloads per day. Yesterday, it was downloaded 6 times.
The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.
Last 365 days
This package has been downloaded 1,993 times in the last 365 days. Now we’re talking! This work is officially 'heard of in academic circles', just like those wild research papers on synthetic bananas. The day with the most downloads was Jul 21, 2024 with 137 downloads.
The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.
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Dependencies
- Imports5 packages
- Suggests2 packages