protti

Bottom-Up Proteomics and LiP-MS Quality Control and Data Analysis Tools

CRAN Package

Useful functions and workflows for proteomics quality control and data analysis of both limited proteolysis-coupled mass spectrometry (LiP-MS) (Feng et. al. (2014) ) and regular bottom-up proteomics experiments. Data generated with search tools such as 'Spectronaut', 'MaxQuant' and 'Proteome Discover' can be easily used due to flexibility of functions.


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  • Depends1 package
  • Imports23 packages
  • Suggests25 packages