psborrow2
Bayesian Dynamic Borrowing Analysis and Simulation
Bayesian dynamic borrowing is an approach to incorporating external data to supplement a randomized, controlled trial analysis in which external data are incorporated in a dynamic way (e.g., based on similarity of outcomes); see Viele 2013 doi:10.1002/pst.1589 for an overview. This package implements the hierarchical commensurate prior approach to dynamic borrowing as described in Hobbes 2011 doi:10.1111/j.1541-0420.2011.01564.x. There are three main functionalities. First, 'psborrow2' provides a user-friendly interface for applying dynamic borrowing on the study results handles the Markov Chain Monte Carlo sampling on behalf of the user. Second, 'psborrow2' provides a simulation framework to compare different borrowing parameters (e.g. full borrowing, no borrowing, dynamic borrowing) and other trial and borrowing characteristics (e.g. sample size, covariates) in a unified way. Third, 'psborrow2' provides a set of functions to generate data for simulation studies, and also allows the user to specify their own data generation process. This package is designed to use the sampling functions from 'cmdstanr' which can be installed from https://mc-stan.org/r-packages/.
- Version0.0.3.4
- R versionunknown
- LicenseApache License 2.0
- Needs compilation?No
- Languageen-US
- Last release04/30/2024
Documentation
- Vignette7. Data Simulation
- Vignette2. Conduct a hybrid control analysis on a dataset using BDB
- Vignette3. Specifying prior distributions
- Vignette5. Incorporating propensity scores analysis in psborrow2
- Vignette1. Getting started with psborrow2
- Vignette4. Conduct a simulation study
- Vignette6. Comparison of Fixed Weights
- MaterialNEWS
Team
Matt Secrest
MaintainerShow author detailsIsaac Gravestock
Show author detailsRolesAuthorManoj Khanal
Show author detailsRolesContributorCraig Gower-Page
Show author detailsRolesContributorGenentech, Inc.
Show author detailsRolesCopyright holder, fndMingyang Shan
Show author detailsRolesContributorKexin Jin
Show author detailsRolesContributorZhi Yang
Show author detailsRolesContributor
Insights
Last 30 days
This package has been downloaded 256 times in the last 30 days. Now we're getting somewhere! Enough downloads to populate a lively group chat. The following heatmap shows the distribution of downloads per day. Yesterday, it was downloaded 3 times.
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Last 365 days
This package has been downloaded 5,845 times in the last 365 days. A solid achievement! Enough downloads to get noticed at department meetings. The day with the most downloads was May 05, 2024 with 65 downloads.
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Dependencies
- Imports8 packages
- Suggests20 packages