CRAN/E | pureseqtmr

pureseqtmr

Predict Transmembrane Protein Topology

Installation

About

Proteins reside in either the cell plasma or in the cell membrane. A membrane protein goes through the membrane at least once. Given the amino acid sequence of a membrane protein, the tool 'PureseqTM' (, as described in "Efficient And Accurate Prediction Of Transmembrane Topology From Amino acid sequence only.", Wang, Qing, et al (2019), doi:10.1101/627307), can predict the topology of a membrane protein. This package allows one to use 'PureseqTM' from R.

github.com/richelbilderbeek/pureseqtmr/
System requirements PureseqTM (https://github.com/PureseqTM/pureseqTM_package)
Bug report File report

Key Metrics

Version 1.4
R ≥ 3.5.0
Published 2023-04-06 547 days ago
Needs compilation? yes
License GPL-3
CRAN checks pureseqtmr results

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Maintainer

Maintainer

Richèl J.C. Bilderbeek

Authors

Richèl J.C. Bilderbeek

aut / cre

Material

Reference manual
Package source

Vignettes

Demo

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

pureseqtmr archive

Depends

R ≥ 3.5.0

Imports

data.table
devtools
dplyr
ggplot2
Peptides
plyr
rappdirs
readr
stringr
tibble
Rcpp

Suggests

testthat
knitr
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LinkingTo

Rcpp