rehh

Population genetic data such as 'Single Nucleotide Polymorphisms' (SNPs) is often used to identify genomic regions that have been under recent natural or artificial selection and might provide clues about the molecular mechanisms of adaptation. One approach, the concept of an 'Extended Haplotype Homozygosity' (EHH), introduced by (Sabeti 2002) doi:10.1038/nature01140, has given rise to several statistics designed for whole genome scans. The package provides functions to compute three of these, namely: 'iHS' (Voight 2006) doi:10.1371/journal.pbio.0040072 for detecting positive or 'Darwinian' selection within a single population as well as 'Rsb' (Tang 2007) doi:10.1371/journal.pbio.0050171 and 'XP-EHH' (Sabeti 2007) doi:10.1038/nature06250, targeted at differential selection between two populations. Various plotting functions are included to facilitate visualization and interpretation of these statistics.

Last 30 days

This package has been downloaded 560 times in the last 30 days. More downloads than an obscure whitepaper, but not enough to bring down any servers. A solid effort! The following heatmap shows the distribution of downloads per day. Yesterday, it was downloaded 36 times.

The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.

Last 365 days

This package has been downloaded 7,917 times in the last 365 days. Impressive! The kind of number that makes colleagues ask, 'How did you do it?' The day with the most downloads was Feb 20, 2025 with 79 downloads.

The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.