CRAN/E | rhierbaps

rhierbaps

Clustering Genetic Sequence Data Using the HierBAPS Algorithm

Installation

About

Implements the hierarchical Bayesian analysis of populations structure (hierBAPS) algorithm of Cheng et al. (2013) doi:10.1093/molbev/mst028 for clustering DNA sequences from multiple sequence alignments in FASTA format. The implementation includes improved defaults and plotting capabilities and unlike the original 'MATLAB' version removes singleton SNPs by default.

Citation rhierbaps citation info
github.com/gtonkinhill/rhierbaps
Bug report File report

Key Metrics

Version 1.1.4
Published 2022-11-18 694 days ago
Needs compilation? no
License MIT
License File
CRAN checks rhierbaps results

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Maintainer

Maintainer

Gerry Tonkin-Hill

Authors

Gerry Tonkin-Hill

cre / aut

Material

README
NEWS
Reference manual
Package source

Vignettes

Introduction to rhierbaps

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

rhierbaps archive

Imports

ape
purrr
utils
ggplot2
matrixStats
patchwork
methods

Suggests

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