CRAN/E | riceidconverter

riceidconverter

Convert Biological ID from RAP or MSU to SYMBOL for Oryza Sativa

Installation

About

Convert one biological ID to another of rice (Oryza sativa). Rice(Oryza sativa) has more than one form gene ID for the genome. The two main gene ID for rice genome are the RAP (The Rice Annotation Project, , and the MSU(The Rice Genome Annotation Project, . All RAP rice gene IDs are of the form Os##g####### as explained on the website . All MSU rice gene IDs are of the form LOC_Os##g##### as explained on the website . All SYMBOL rice gene IDs are the unique name on the NCBI(National Center for Biotechnology Information, . The TRANSCRIPTID, is the transcript id of rice, are of the form Os##t#######. The researchers usually need to converter between various IDs. Such as converter RAP to SYMBOLS for function searching on NCBI. There are a lot of websites with the function for converting RAP to MSU or MSU to RA, such as 'ID Converter' . But it is difficult to convert super multiple IDs on these websites. The package can convert all IDs between the three IDs (RAP, MSU and SYMBOL) regardless of the number.

Key Metrics

Version 1.1.1
R ≥ 3.5.0
Published 2020-02-14 1702 days ago
Needs compilation? no
License Artistic-2.0
CRAN checks riceidconverter results

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Maintainer

Maintainer

Xiang LI

Authors

Xiang LI

Material

Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

riceidconverter archive

Depends

R ≥ 3.5.0

Imports

dplyr

Reverse Imports

ricegeneann